5 Commits (oxigraph-main)

Author	SHA1	Message	Date
Hui Xiao	151242ce46	Group rocksdb.sst.read.micros stat by IOActivity flush and compaction (#11288) ... Summary: **Context:** The existing stat rocksdb.sst.read.micros does not reflect each of compaction and flush cases but aggregate them, which is not so helpful for us to understand IO read behavior of each of them. **Summary** - Update `StopWatch` and `RandomAccessFileReader` to record `rocksdb.sst.read.micros` and `rocksdb.file.{flush/compaction}.read.micros` - Fixed the default histogram in `RandomAccessFileReader` - New field `ReadOptions/IOOptions::io_activity`; Pass `ReadOptions` through paths under db open, flush and compaction to where we can prepare `IOOptions` and pass it to `RandomAccessFileReader` - Use `thread_status_util` for assertion in `DbStressFSWrapper` for continuous testing on we are passing correct `io_activity` under db open, flush and compaction Pull Request resolved: https://github.com/facebook/rocksdb/pull/11288 Test Plan: - **Stress test** - **Db bench 1: rocksdb.sst.read.micros COUNT ≈ sum of rocksdb.file.read.flush.micros's and rocksdb.file.read.compaction.micros's.** (without blob) - May not be exactly the same due to `HistogramStat::Add` only guarantees atomic not accuracy across threads. ``` ./db_bench -db=/dev/shm/testdb/ -statistics=true -benchmarks="fillseq" -key_size=32 -value_size=512 -num=50000 -write_buffer_size=655 -target_file_size_base=655 -disable_auto_compactions=false -compression_type=none -bloom_bits=3 (-use_plain_table=1 -prefix_size=10) ``` ``` // BlockBasedTable rocksdb.sst.read.micros P50 : 2.009374 P95 : 4.968548 P99 : 8.110362 P100 : 43.000000 COUNT : 40456 SUM : 114805 rocksdb.file.read.flush.micros P50 : 1.871841 P95 : 3.872407 P99 : 5.540541 P100 : 43.000000 COUNT : 2250 SUM : 6116 rocksdb.file.read.compaction.micros P50 : 2.023109 P95 : 5.029149 P99 : 8.196910 P100 : 26.000000 COUNT : 38206 SUM : 108689 // PlainTable Does not apply ``` - **Db bench 2: performance** **Read** SETUP: db with 900 files ``` ./db_bench -db=/dev/shm/testdb/ -benchmarks="fillseq" -key_size=32 -value_size=512 -num=50000 -write_buffer_size=655 -disable_auto_compactions=true -target_file_size_base=655 -compression_type=none ```run till convergence ``` ./db_bench -seed=1678564177044286 -use_existing_db=true -db=/dev/shm/testdb -benchmarks=readrandom[-X60] -statistics=true -num=1000000 -disable_auto_compactions=true -compression_type=none -bloom_bits=3 ``` Pre-change `readrandom [AVG 60 runs] : 21568 (± 248) ops/sec` Post-change (no regression, -0.3%) `readrandom [AVG 60 runs] : 21486 (± 236) ops/sec` **Compaction/Flush**run till convergence ``` ./db_bench -db=/dev/shm/testdb2/ -seed=1678564177044286 -benchmarks="fillseq[-X60]" -key_size=32 -value_size=512 -num=50000 -write_buffer_size=655 -disable_auto_compactions=false -target_file_size_base=655 -compression_type=none rocksdb.sst.read.micros COUNT : 33820 rocksdb.sst.read.flush.micros COUNT : 1800 rocksdb.sst.read.compaction.micros COUNT : 32020 ``` Pre-change `fillseq [AVG 46 runs] : 1391 (± 214) ops/sec; 0.7 (± 0.1) MB/sec` Post-change (no regression, ~-0.4%) `fillseq [AVG 46 runs] : 1385 (± 216) ops/sec; 0.7 (± 0.1) MB/sec` Reviewed By: ajkr Differential Revision: D44007011 Pulled By: hx235 fbshipit-source-id: a54c89e4846dfc9a135389edf3f3eedfea257132	2 years ago
Peter Dillinger	2d0380adbe	Allow manifest fix-up without requiring prior state (#10796) ... Summary: This change is motivated by ensuring that `ldb update_manifest` or `UpdateManifestForFilesState` can run without expecting files to open when the old temperature is provided (in case the FileSystem strictly interprets non-kUnknown), but ended up fixing a problem in `OfflineManifestWriter` (used by `ldb unsafe_remove_sst_file`) where it would open some SST files during recovery and expect them to match the prior manifest state, even if not required by the intended new state. Also update BackupEngine to retry with Temperature kUnknown when reading file with potentially "wrong" temperature. Pull Request resolved: https://github.com/facebook/rocksdb/pull/10796 Test Plan: tests added/updated, that fail before the change(s) and now pass Reviewed By: jay-zhuang Differential Revision: D40232645 Pulled By: jay-zhuang fbshipit-source-id: b5aa2688aecfe0c320b80a7da689b315414c20be	2 years ago
Hui Xiao	e484b81eee	Sync dir containing CURRENT after RenameFile on CURRENT as much as possible (#10573) ... Summary: **Context:** Below crash test revealed a bug that directory containing CURRENT file (short for `dir_contains_current_file` below) was not always get synced after a new CURRENT is created and being called with `RenameFile` as part of the creation. This bug exposes a risk that such un-synced directory containing the updated CURRENT can’t survive a host crash (e.g, power loss) hence get corrupted. This then will be followed by a recovery from a corrupted CURRENT that we don't want. The root-cause is that a nullptr `FSDirectory* dir_contains_current_file` sometimes gets passed-down to `SetCurrentFile()` hence in those case `dir_contains_current_file->FSDirectory::FsyncWithDirOptions()` will be skipped (which otherwise will internally call`Env/FS::SyncDic()` ) ``` ./db_stress --acquire_snapshot_one_in=10000 --adaptive_readahead=1 --allow_data_in_errors=True --avoid_unnecessary_blocking_io=0 --backup_max_size=104857600 --backup_one_in=100000 --batch_protection_bytes_per_key=8 --block_size=16384 --bloom_bits=134.8015470676662 --bottommost_compression_type=disable --cache_size=8388608 --checkpoint_one_in=1000000 --checksum_type=kCRC32c --clear_column_family_one_in=0 --compact_files_one_in=1000000 --compact_range_one_in=1000000 --compaction_pri=2 --compaction_ttl=100 --compression_max_dict_buffer_bytes=511 --compression_max_dict_bytes=16384 --compression_type=zstd --compression_use_zstd_dict_trainer=1 --compression_zstd_max_train_bytes=65536 --continuous_verification_interval=0 --data_block_index_type=0 --db=$db --db_write_buffer_size=1048576 --delpercent=5 --delrangepercent=0 --destroy_db_initially=0 --disable_wal=0 --enable_compaction_filter=0 --enable_pipelined_write=1 --expected_values_dir=$exp --fail_if_options_file_error=1 --file_checksum_impl=none --flush_one_in=1000000 --get_current_wal_file_one_in=0 --get_live_files_one_in=1000000 --get_property_one_in=1000000 --get_sorted_wal_files_one_in=0 --index_block_restart_interval=4 --ingest_external_file_one_in=0 --iterpercent=10 --key_len_percent_dist=1,30,69 --level_compaction_dynamic_level_bytes=True --mark_for_compaction_one_file_in=10 --max_background_compactions=20 --max_bytes_for_level_base=10485760 --max_key=10000 --max_key_len=3 --max_manifest_file_size=16384 --max_write_batch_group_size_bytes=64 --max_write_buffer_number=3 --max_write_buffer_size_to_maintain=0 --memtable_prefix_bloom_size_ratio=0.001 --memtable_protection_bytes_per_key=1 --memtable_whole_key_filtering=1 --mmap_read=1 --nooverwritepercent=1 --open_metadata_write_fault_one_in=0 --open_read_fault_one_in=0 --open_write_fault_one_in=0 --ops_per_thread=100000000 --optimize_filters_for_memory=1 --paranoid_file_checks=1 --partition_pinning=2 --pause_background_one_in=1000000 --periodic_compaction_seconds=0 --prefix_size=5 --prefixpercent=5 --prepopulate_block_cache=1 --progress_reports=0 --read_fault_one_in=1000 --readpercent=45 --recycle_log_file_num=0 --reopen=0 --ribbon_starting_level=999 --secondary_cache_fault_one_in=32 --secondary_cache_uri=compressed_secondary_cache://capacity=8388608 --set_options_one_in=10000 --snapshot_hold_ops=100000 --sst_file_manager_bytes_per_sec=0 --sst_file_manager_bytes_per_truncate=0 --subcompactions=3 --sync_fault_injection=1 --target_file_size_base=2097 --target_file_size_multiplier=2 --test_batches_snapshots=1 --top_level_index_pinning=1 --use_full_merge_v1=1 --use_merge=1 --value_size_mult=32 --verify_checksum=1 --verify_checksum_one_in=1000000 --verify_db_one_in=100000 --verify_sst_unique_id_in_manifest=1 --wal_bytes_per_sync=524288 --write_buffer_size=4194 --writepercent=35 ``` ``` stderr: WARNING: prefix_size is non-zero but memtablerep != prefix_hash db_stress: utilities/fault_injection_fs.cc:748: virtual rocksdb::IOStatus rocksdb::FaultInjectionTestFS::RenameFile(const std::string &, const std::string &, const rocksdb::IOOptions &, rocksdb::IODebugContext *): Assertion `tlist.find(tdn.second) == tlist.end()' failed.` ``` **Summary:** The PR ensured the non-test path pass down a non-null dir containing CURRENT (which is by current RocksDB assumption just db_dir) by doing the following: - Renamed `directory_to_fsync` as `dir_contains_current_file` in `SetCurrentFile()` to tighten the association between this directory and CURRENT file - Changed `SetCurrentFile()` API to require `dir_contains_current_file` being passed-in, instead of making it by default nullptr. - Because `SetCurrentFile()`'s `dir_contains_current_file` is passed down from `VersionSet::LogAndApply()` then `VersionSet::ProcessManifestWrites()` (i.e, think about this as a chain of 3 functions related to MANIFEST update), these 2 functions also got refactored to require `dir_contains_current_file` - Updated the non-test-path callers of these 3 functions to obtain and pass in non-nullptr `dir_contains_current_file`, which by current assumption of RocksDB, is the `FSDirectory* db_dir`. - `db_impl` path will obtain `DBImpl::directories_.getDbDir()` while others with no access to such `directories_` are obtained on the fly by creating such object `FileSystem::NewDirectory(..)` and manage it by unique pointers to ensure short life time. Pull Request resolved: https://github.com/facebook/rocksdb/pull/10573 Test Plan: - `make check` - Passed the repro db_stress command - For future improvement, since we currently don't assert dir containing CURRENT to be non-nullptr due to https://github.com/facebook/rocksdb/pull/10573#pullrequestreview-1087698899, there is still chances that future developers mistakenly pass down nullptr dir containing CURRENT thus resulting skipped sync dir and cause the bug again. Therefore a smarter test (e.g, such as quoted from ajkr "(make) unsynced data loss to be dropping files corresponding to unsynced directory entries") is still needed. Reviewed By: ajkr Differential Revision: D39005886 Pulled By: hx235 fbshipit-source-id: 336fb9090d0cfa6ca3dd580db86268007dde7f5a	2 years ago
Gang Liao	deff48bcef	Add blob source to retrieve blobs in RocksDB (#10198) ... Summary: There is currently no caching mechanism for blobs, which is not ideal especially when the database resides on remote storage (where we cannot rely on the OS page cache). As part of this task, we would like to make it possible for the application to configure a blob cache. In this task, we formally introduced the blob source to RocksDB. BlobSource is a new abstraction layer that provides universal access to blobs, regardless of whether they are in the blob cache, secondary cache, or (remote) storage. Depending on user settings, it always fetch blobs from multi-tier cache and storage with minimal cost. Note: The new `MultiGetBlob()` implementation is not included in the current PR. To go faster, we aim to create a separate PR for it in parallel! This PR is a part of https://github.com/facebook/rocksdb/issues/10156 Pull Request resolved: https://github.com/facebook/rocksdb/pull/10198 Reviewed By: ltamasi Differential Revision: D37294735 Pulled By: gangliao fbshipit-source-id: 9cb50422d9dd1bc03798501c2778b6c7520c7a1e	3 years ago
Peter Dillinger	a8a422e962	Add manifest fix-up utility for file temperatures (#9683) ... Summary: The goal of this change is to allow changes to the "current" (in FileSystem) file temperatures to feed back into DB metadata, so that they can inform decisions and stats reporting. In part because of modular code factoring, it doesn't seem easy to do this automagically, where opening an SST file and observing current Temperature different from expected would trigger a change in metadata and DB manifest write (essentially giving the deep read path access to the write path). It is also difficult to do this while the DB is open because of the limitations of LogAndApply. This change allows updating file temperature metadata on a closed DB using an experimental utility function UpdateManifestForFilesState() or `ldb update_manifest --update_temperatures`. This should suffice for "migration" scenarios where outside tooling has placed or re-arranged DB files into a (different) tiered configuration without going through RocksDB itself (currently, only compaction can change temperature metadata). Some details: * Refactored and added unit test for `ldb unsafe_remove_sst_file` because of shared functionality * Pulled in autovector.h changes from https://github.com/facebook/rocksdb/issues/9546 to fix SuperVersionContext move constructor (related to an older draft of this change) Possible follow-up work: * Support updating manifest with file checksums, such as when a new checksum function is used and want existing DB metadata updated for it. * It's possible that for some repair scenarios, lighter weight than full repair, we might want to support UpdateManifestForFilesState() to modify critical file details like size or checksum using same algorithm. But let's make sure these are differentiated from modifying file details in ways that don't suspect corruption (or require extreme trust). Pull Request resolved: https://github.com/facebook/rocksdb/pull/9683 Test Plan: unit tests added Reviewed By: jay-zhuang Differential Revision: D34798828 Pulled By: pdillinger fbshipit-source-id: cfd83e8fb10761d8c9e7f9c020d68c9106a95554	3 years ago