Summary:
add option `block_protection_bytes_per_key` and implementation for block per key-value checksum. The main changes are
1. checksum construction and verification in block.cc/h
2. pass the option `block_protection_bytes_per_key` around (mainly for methods defined in table_cache.h)
3. unit tests/crash test updates
Tests:
* Added unit tests
* Crash test: `python3 tools/db_crashtest.py blackbox --simple --block_protection_bytes_per_key=1 --write_buffer_size=1048576`
Follow up (maybe as a separate PR): make sure corruption status returned from BlockIters are correctly handled.
Performance:
Turning on block per KV protection has a non-trivial negative impact on read performance and costs additional memory.
For memory, each block includes additional 24 bytes for checksum-related states beside checksum itself. For CPU, I set up a DB of size ~1.2GB with 5M keys (32 bytes key and 200 bytes value) which compacts to ~5 SST files (target file size 256 MB) in L6 without compression. I tested readrandom performance with various block cache size (to mimic various cache hit rates):
```
SETUP
make OPTIMIZE_LEVEL="-O3" USE_LTO=1 DEBUG_LEVEL=0 -j32 db_bench
./db_bench -benchmarks=fillseq,compact0,waitforcompaction,compact,waitforcompaction -write_buffer_size=33554432 -level_compaction_dynamic_level_bytes=true -max_background_jobs=8 -target_file_size_base=268435456 --num=5000000 --key_size=32 --value_size=200 --compression_type=none
BENCHMARK
./db_bench --use_existing_db -benchmarks=readtocache,readrandom[-X10] --num=5000000 --key_size=32 --disable_auto_compactions --reads=1000000 --block_protection_bytes_per_key=[0|1] --cache_size=$CACHESIZE
The readrandom ops/sec looks like the following:
Block cache size: 2GB 1.2GB * 0.9 1.2GB * 0.8 1.2GB * 0.5 8MB
Main 240805 223604 198176 161653 139040
PR prot_bytes=0 238691 226693 200127 161082 141153
PR prot_bytes=1 214983 193199 178532 137013 108211
prot_bytes=1 vs -10% -15% -10.8% -15% -23%
prot_bytes=0
```
The benchmark has a lot of variance, but there was a 5% to 25% regression in this benchmark with different cache hit rates.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/11287
Reviewed By: ajkr
Differential Revision: D43970708
Pulled By: cbi42
fbshipit-source-id: ef98d898b71779846fa74212b9ec9e08b7183940
Summary:
**Context:**
The existing stat rocksdb.sst.read.micros does not reflect each of compaction and flush cases but aggregate them, which is not so helpful for us to understand IO read behavior of each of them.
**Summary**
- Update `StopWatch` and `RandomAccessFileReader` to record `rocksdb.sst.read.micros` and `rocksdb.file.{flush/compaction}.read.micros`
- Fixed the default histogram in `RandomAccessFileReader`
- New field `ReadOptions/IOOptions::io_activity`; Pass `ReadOptions` through paths under db open, flush and compaction to where we can prepare `IOOptions` and pass it to `RandomAccessFileReader`
- Use `thread_status_util` for assertion in `DbStressFSWrapper` for continuous testing on we are passing correct `io_activity` under db open, flush and compaction
Pull Request resolved: https://github.com/facebook/rocksdb/pull/11288
Test Plan:
- **Stress test**
- **Db bench 1: rocksdb.sst.read.micros COUNT ≈ sum of rocksdb.file.read.flush.micros's and rocksdb.file.read.compaction.micros's.** (without blob)
- May not be exactly the same due to `HistogramStat::Add` only guarantees atomic not accuracy across threads.
```
./db_bench -db=/dev/shm/testdb/ -statistics=true -benchmarks="fillseq" -key_size=32 -value_size=512 -num=50000 -write_buffer_size=655 -target_file_size_base=655 -disable_auto_compactions=false -compression_type=none -bloom_bits=3 (-use_plain_table=1 -prefix_size=10)
```
```
// BlockBasedTable
rocksdb.sst.read.micros P50 : 2.009374 P95 : 4.968548 P99 : 8.110362 P100 : 43.000000 COUNT : 40456 SUM : 114805
rocksdb.file.read.flush.micros P50 : 1.871841 P95 : 3.872407 P99 : 5.540541 P100 : 43.000000 COUNT : 2250 SUM : 6116
rocksdb.file.read.compaction.micros P50 : 2.023109 P95 : 5.029149 P99 : 8.196910 P100 : 26.000000 COUNT : 38206 SUM : 108689
// PlainTable
Does not apply
```
- **Db bench 2: performance**
**Read**
SETUP: db with 900 files
```
./db_bench -db=/dev/shm/testdb/ -benchmarks="fillseq" -key_size=32 -value_size=512 -num=50000 -write_buffer_size=655 -disable_auto_compactions=true -target_file_size_base=655 -compression_type=none
```run till convergence
```
./db_bench -seed=1678564177044286 -use_existing_db=true -db=/dev/shm/testdb -benchmarks=readrandom[-X60] -statistics=true -num=1000000 -disable_auto_compactions=true -compression_type=none -bloom_bits=3
```
Pre-change
`readrandom [AVG 60 runs] : 21568 (± 248) ops/sec`
Post-change (no regression, -0.3%)
`readrandom [AVG 60 runs] : 21486 (± 236) ops/sec`
**Compaction/Flush**run till convergence
```
./db_bench -db=/dev/shm/testdb2/ -seed=1678564177044286 -benchmarks="fillseq[-X60]" -key_size=32 -value_size=512 -num=50000 -write_buffer_size=655 -disable_auto_compactions=false -target_file_size_base=655 -compression_type=none
rocksdb.sst.read.micros COUNT : 33820
rocksdb.sst.read.flush.micros COUNT : 1800
rocksdb.sst.read.compaction.micros COUNT : 32020
```
Pre-change
`fillseq [AVG 46 runs] : 1391 (± 214) ops/sec; 0.7 (± 0.1) MB/sec`
Post-change (no regression, ~-0.4%)
`fillseq [AVG 46 runs] : 1385 (± 216) ops/sec; 0.7 (± 0.1) MB/sec`
Reviewed By: ajkr
Differential Revision: D44007011
Pulled By: hx235
fbshipit-source-id: a54c89e4846dfc9a135389edf3f3eedfea257132
Summary:
We haven't been actively mantaining RocksDB LITE recently and the size must have been gone up significantly. We are removing the support.
Most of changes were done through following comments:
unifdef -m -UROCKSDB_LITE `git grep -l ROCKSDB_LITE | egrep '[.](cc|h)'`
by Peter Dillinger. Others changes were manually applied to build scripts, CircleCI manifests, ROCKSDB_LITE is used in an expression and file db_stress_test_base.cc.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/11147
Test Plan: See CI
Reviewed By: pdillinger
Differential Revision: D42796341
fbshipit-source-id: 4920e15fc2060c2cd2221330a6d0e5e65d4b7fe2
Summary:
Ran `find ./db/ -type f | xargs clang-format -i`. Excluded minor changes it tried to make on db/db_impl/. Everything else it changed was directly under db/ directory. Included minor manual touchups mentioned in PR commit history.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/10910
Reviewed By: riversand963
Differential Revision: D40880683
Pulled By: ajkr
fbshipit-source-id: cfe26cda05b3fb9a72e3cb82c286e21d8c5c4174
Summary:
`VerifyChecksum()` does not specify `largest_seqno` when creating a `TableReader`. As a result, the `TableReader` uses the `TableReaderOptions` default value (0) for `largest_seqno`. This causes the following error when the file has a nonzero global seqno in its properties:
```
Corruption: An external sst file with version 2 have global seqno property with value , while largest seqno in the file is 0
```
This PR fixes this by specifying `largest_seqno` in `VerifyChecksumInternal` with `largest_seqno` from the file metadata.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/9919
Test Plan: `make check`
Reviewed By: ajkr
Differential Revision: D36028824
Pulled By: cbi42
fbshipit-source-id: 428d028a79386f46ef97bb6b6051dc76c83e1f2b
Summary:
Users can set the priority for file reads associated with their operation by setting `ReadOptions::rate_limiter_priority` to something other than `Env::IO_TOTAL`. Rate limiting `VerifyChecksum()` and `VerifyFileChecksums()` is the motivation for this PR, so it also includes benchmarks and minor bug fixes to get that working.
`RandomAccessFileReader::Read()` already had support for rate limiting compaction reads. I changed that rate limiting to be non-specific to compaction, but rather performed according to the passed in `Env::IOPriority`. Now the compaction read rate limiting is supported by setting `rate_limiter_priority = Env::IO_LOW` on its `ReadOptions`.
There is no default value for the new `Env::IOPriority` parameter to `RandomAccessFileReader::Read()`. That means this PR goes through all callers (in some cases multiple layers up the call stack) to find a `ReadOptions` to provide the priority. There are TODOs for cases I believe it would be good to let user control the priority some day (e.g., file footer reads), and no TODO in cases I believe it doesn't matter (e.g., trace file reads).
The API doc only lists the missing cases where a file read associated with a provided `ReadOptions` cannot be rate limited. For cases like file ingestion checksum calculation, there is no API to provide `ReadOptions` or `Env::IOPriority`, so I didn't count that as missing.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/9424
Test Plan:
- new unit tests
- new benchmarks on ~50MB database with 1MB/s read rate limit and 100ms refill interval; verified with strace reads are chunked (at 0.1MB per chunk) and spaced roughly 100ms apart.
- setup command: `./db_bench -benchmarks=fillrandom,compact -db=/tmp/testdb -target_file_size_base=1048576 -disable_auto_compactions=true -file_checksum=true`
- benchmarks command: `strace -ttfe pread64 ./db_bench -benchmarks=verifychecksum,verifyfilechecksums -use_existing_db=true -db=/tmp/testdb -rate_limiter_bytes_per_sec=1048576 -rate_limit_bg_reads=1 -rate_limit_user_ops=true -file_checksum=true`
- crash test using IO_USER priority on non-validation reads with https://github.com/facebook/rocksdb/issues/9567 reverted: `python3 tools/db_crashtest.py blackbox --max_key=1000000 --write_buffer_size=524288 --target_file_size_base=524288 --level_compaction_dynamic_level_bytes=true --duration=3600 --rate_limit_bg_reads=true --rate_limit_user_ops=true --rate_limiter_bytes_per_sec=10485760 --interval=10`
Reviewed By: hx235
Differential Revision: D33747386
Pulled By: ajkr
fbshipit-source-id: a2d985e97912fba8c54763798e04f006ccc56e0c
Summary:
Fixes a major performance regression in 6.26, where
extra CPU is spent in SliceTransform::AsString when reads involve
a prefix_extractor (Get, MultiGet, Seek). Common case performance
is now better than 6.25.
This change creates a "fast path" for verifying that the current prefix
extractor is unchanged and compatible with what was used to
generate a table file. This fast path detects the common case by
pointer comparison on the current prefix_extractor and a "known
good" prefix extractor (if applicable) that is saved at the time the
table reader is opened. The "known good" prefix extractor is saved
as another shared_ptr copy (in an existing field, however) to ensure
the pointer is not recycled.
When the prefix_extractor has changed to a different instance but
same compatible configuration (rare, odd), performance is still a
regression compared to 6.25, but this is likely acceptable because
of the oddity of such a case. The performance of incompatible
prefix_extractor is essentially unchanged.
Also fixed a minor case (ForwardIterator) where a prefix_extractor
could be used via a raw pointer after being freed as a shared_ptr,
if replaced via SetOptions.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/9407
Test Plan:
## Performance
Populate DB with `TEST_TMPDIR=/dev/shm/rocksdb ./db_bench -benchmarks=fillrandom -num=10000000 -disable_wal=1 -write_buffer_size=10000000 -bloom_bits=16 -compaction_style=2 -fifo_compaction_max_table_files_size_mb=10000 -fifo_compaction_allow_compaction=0 -prefix_size=12`
Running head-to-head comparisons simultaneously with `TEST_TMPDIR=/dev/shm/rocksdb ./db_bench -use_existing_db -readonly -benchmarks=seekrandom -num=10000000 -duration=20 -disable_wal=1 -bloom_bits=16 -compaction_style=2 -fifo_compaction_max_table_files_size_mb=10000 -fifo_compaction_allow_compaction=0 -prefix_size=12`
Below each is compared by ops/sec vs. baseline which is version 6.25 (multiple baseline runs because of variable machine load)
v6.26: 4833 vs. 6698 (<- major regression!)
v6.27: 4737 vs. 6397 (still)
New: 6704 vs. 6461 (better than baseline in common case)
Disabled fastpath: 4843 vs. 6389 (e.g. if prefix extractor instance changes but is still compatible)
Changed prefix size (no usable filter) in new: 787 vs. 5927
Changed prefix size (no usable filter) in new & baseline: 773 vs. 784
Reviewed By: mrambacher
Differential Revision: D33677812
Pulled By: pdillinger
fbshipit-source-id: 571d9711c461fb97f957378a061b7e7dbc4d6a76
Summary:
The ImmutableCFOptions contained a bunch of fields that belonged to the ImmutableDBOptions. This change cleans that up by introducing an ImmutableOptions struct. Following the pattern of Options struct, this class inherits from the DB and CFOption structs (of the Immutable form).
Only one structural change (the ImmutableCFOptions::fs was changed to a shared_ptr from a raw one) is in this PR. All of the other changes involve moving the member variables from the ImmutableCFOptions into the ImmutableOptions and changing member variables or function parameters as required for compilation purposes.
Follow-on PRs may do a further clean-up of the code, such as renaming variables (such as "ImmutableOptions cf_options") and potentially eliminating un-needed function parameters (there is no longer a need to pass both an ImmutableDBOptions and an ImmutableOptions to a function).
Pull Request resolved: https://github.com/facebook/rocksdb/pull/8262
Reviewed By: pdillinger
Differential Revision: D28226540
Pulled By: mrambacher
fbshipit-source-id: 18ae71eadc879dedbe38b1eb8e6f9ff5c7147dbf
Summary:
sst_dump can issue many file reads from the file system. This doesn't work well with file systems without a OS cache, especially remote file systems. In order to mitigate this problem, several improvements are done:
1. --readahead_size is added, so that users can specify readahead size when scanning the data.
2. Force a 512KB tail readahead, which prevents three I/Os for footer, meta index and property blocks and hopefully index and filter blocks too.
3. Consoldiate SSTDump's I/Os before opening the file for read. Use the same file prefetch buffer.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/6836
Test Plan: Add a test that covers this new feature.
Reviewed By: pdillinger
Differential Revision: D21516607
fbshipit-source-id: 3ae43526286f67b2f4a5bdedfbc92719d579b87e
Summary:
The dynamic_cast in the filter benchmark causes release mode to fail due to
no-rtti. Replace with static_cast_with_check.
Signed-off-by: Derrick Pallas <derrick@pallas.us>
Addition by peterd: Remove unnecessary 2nd template arg on all static_cast_with_check
Pull Request resolved: https://github.com/facebook/rocksdb/pull/6732
Reviewed By: ltamasi
Differential Revision: D21304260
Pulled By: pdillinger
fbshipit-source-id: 6e8eb437c4ca5a16dbbfa4053d67c4ad55f1608c
Summary:
When dynamically linking two binaries together, different builds of RocksDB from two sources might cause errors. To provide a tool for user to solve the problem, the RocksDB namespace is changed to a flag which can be overridden in build time.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/6433
Test Plan: Build release, all and jtest. Try to build with ROCKSDB_NAMESPACE with another flag.
Differential Revision: D19977691
fbshipit-source-id: aa7f2d0972e1c31d75339ac48478f34f6cfcfb3e
Summary:
The current Env API encompasses both storage/file operations, as well as OS related operations. Most of the APIs return a Status, which does not have enough metadata about an error, such as whether its retry-able or not, scope (i.e fault domain) of the error etc., that may be required in order to properly handle a storage error. The file APIs also do not provide enough control over the IO SLA, such as timeout, prioritization, hinting about placement and redundancy etc.
This PR separates out the file/storage APIs from Env into a new FileSystem class. The APIs are updated to return an IOStatus with metadata about the error, as well as to take an IOOptions structure as input in order to allow more control over the IO.
The user can set both ```options.env``` and ```options.file_system``` to specify that RocksDB should use the former for OS related operations and the latter for storage operations. Internally, a ```CompositeEnvWrapper``` has been introduced that inherits from ```Env``` and redirects individual methods to either an ```Env``` implementation or the ```FileSystem``` as appropriate. When options are sanitized during ```DB::Open```, ```options.env``` is replaced with a newly allocated ```CompositeEnvWrapper``` instance if both env and file_system have been specified. This way, the rest of the RocksDB code can continue to function as before.
This PR also ports PosixEnv to the new API by splitting it into two - PosixEnv and PosixFileSystem. PosixEnv is defined as a sub-class of CompositeEnvWrapper, and threading/time functions are overridden with Posix specific implementations in order to avoid an extra level of indirection.
The ```CompositeEnvWrapper``` translates ```IOStatus``` return code to ```Status```, and sets the severity to ```kSoftError``` if the io_status is retryable. The error handling code in RocksDB can then recover the DB automatically.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5761
Differential Revision: D18868376
Pulled By: anand1976
fbshipit-source-id: 39efe18a162ea746fabac6360ff529baba48486f
Summary:
Right now VerifyChecksum() doesn't do read-ahead. In some use cases, users won't be able to achieve good performance. With this change, by default, RocksDB will do a default readahead, and users will be able to overwrite the readahead size by passing in a ReadOptions.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5713
Test Plan: Add a new unit test.
Differential Revision: D16860874
fbshipit-source-id: 0cff0fe79ac855d3d068e6ccd770770854a68413
Summary:
This PR adds more callers for table readers. These information are only used for block cache analysis so that we can know which caller accesses a block.
1. It renames the BlockCacheLookupCaller to TableReaderCaller as passing the caller from upstream requires changes to table_reader.h and TableReaderCaller is a more appropriate name.
2. It adds more table reader callers in table/table_reader_caller.h, e.g., kCompactionRefill, kExternalSSTIngestion, and kBuildTable.
This PR is long as it requires modification of interfaces in table_reader.h, e.g., NewIterator.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/5454
Test Plan: make clean && COMPILE_WITH_ASAN=1 make check -j32.
Differential Revision: D15819451
Pulled By: HaoyuHuang
fbshipit-source-id: b6caa704c8fb96ddd15b9a934b7e7ea87f88092d
Summary:
Ran the following commands to recursively change all the files under RocksDB:
```
find . -type f -name "*.cc" -exec sed -i 's/ unique_ptr/ std::unique_ptr/g' {} +
find . -type f -name "*.cc" -exec sed -i 's/<unique_ptr/<std::unique_ptr/g' {} +
find . -type f -name "*.cc" -exec sed -i 's/ shared_ptr/ std::shared_ptr/g' {} +
find . -type f -name "*.cc" -exec sed -i 's/<shared_ptr/<std::shared_ptr/g' {} +
```
Running `make format` updated some formatting on the files touched.
Pull Request resolved: https://github.com/facebook/rocksdb/pull/4638
Differential Revision: D12934992
Pulled By: sagar0
fbshipit-source-id: 45a15d23c230cdd64c08f9c0243e5183934338a8
Summary:
https://github.com/facebook/rocksdb/pull/3881 fixed a bug where PinnableSlice pin mmap files which could be deleted with background compaction. This is however a non-issue for ReadOnlyDB when there is no compaction running and max_open_files is -1. This patch reenables the pinning feature for that case.
Closes https://github.com/facebook/rocksdb/pull/4053
Differential Revision: D8662546
Pulled By: maysamyabandeh
fbshipit-source-id: 402962602eb0f644e17822748332999c3af029fd
Summary:
Currently it is not possible to change bloom filter config without restart the db, which is causing a lot of operational complexity for users.
This PR aims to make it possible to dynamically change bloom filter config.
Closes https://github.com/facebook/rocksdb/pull/3601
Differential Revision: D7253114
Pulled By: miasantreble
fbshipit-source-id: f22595437d3e0b86c95918c484502de2ceca120c
Summary:
Using `DeleteFilesInRange` to delete files in a lot of ranges can be slow, because
`VersionSet::LogAndApply` is expensive.
This PR adds a new `DeleteFilesInRange` function to delete files in multiple
ranges at once.
Close https://github.com/facebook/rocksdb/issues/2951
Closes https://github.com/facebook/rocksdb/pull/3431
Differential Revision: D6849228
Pulled By: ajkr
fbshipit-source-id: daeedcabd8def4b1d9ee95a58266dee77b5d68cb
Summary:
We need a tool to check any sst file corruption in the db.
It will check all the sst files in current version and read all the blocks (data, meta, index) with checksum verification. If any verification fails, the function will return non-OK status.
Closes https://github.com/facebook/rocksdb/pull/2498
Differential Revision: D5324269
Pulled By: lightmark
fbshipit-source-id: 6f8a272008b722402a772acfc804524c9d1a483b
Summary:
Replace dynamic_cast<> so that users can choose to build with RTTI off, so that they can save several bytes per object, and get tiny more memory available.
Some nontrivial changes:
1. Add Comparator::GetRootComparator() to get around the internal comparator hack
2. Add the two experiemental functions to DB
3. Add TableFactory::GetOptionString() to avoid unnecessary casting to get the option string
4. Since 3 is done, move the parsing option functions for table factory to table factory files too, to be symmetric.
Closes https://github.com/facebook/rocksdb/pull/2645
Differential Revision: D5502723
Pulled By: siying
fbshipit-source-id: fd13cec5601cf68a554d87bfcf056f2ffa5fbf7c
Summary:
In case users cast a subclass of db* into dbimpl*
Closes https://github.com/facebook/rocksdb/pull/2222
Differential Revision: D4964486
Pulled By: lightmark
fbshipit-source-id: 0ccdc08ee8e7a193dfbbe0218c3cbfd795662ca1
Summary:
User could call this with wrapper class of DB or DBImpl
Closes https://github.com/facebook/rocksdb/pull/2200
Differential Revision: D4935530
Pulled By: lightmark
fbshipit-source-id: df9cb61d67d0f3bbcf62f714d77523a459a92883
Summary:
This is an initial diff for providing the ability to delete
files which are completely within a given range of keys.
Test Plan: DBCompactionTest.DeleteRange
Reviewers: IslamAbdelRahman, sdong
Reviewed By: sdong
Subscribers: yoshinorim, dhruba, leveldb
Differential Revision: https://reviews.facebook.net/D52293
Summary: Moved convenience.h out of utilities to remove a dependency on utilities in db.
Test Plan: unit tests. Also compiled a link to the old location to verify the _Pragma works.
Reviewers: sdong, yhchiang, igor
Reviewed By: igor
Subscribers: dhruba, leveldb
Differential Revision: https://reviews.facebook.net/D42201
Summary: Some suggestions for cleanup from Igor.
Test Plan: Regression tests.
Reviewers: igor
Reviewed By: igor
Subscribers: dhruba
Differential Revision: https://reviews.facebook.net/D35169
Summary:
Provide an API which enables users to infor Rocksdb that it is
shutting down.
Test Plan: db_test
Reviewers: sdong, igor
Reviewed By: igor
Subscribers: dhruba, leveldb
Differential Revision: https://reviews.facebook.net/D34617
Summary:
Change namespace from leveldb to rocksdb. This allows a single
application to link in open-source leveldb code as well as
rocksdb code into the same process.
Test Plan: compile rocksdb
Reviewers: emayanke
Reviewed By: emayanke
CC: leveldb
Differential Revision: https://reviews.facebook.net/D13287
Summary: Replace include/leveldb with include/rocksdb.
Test Plan:
make clean; make check
make clean; make release
Differential Revision: https://reviews.facebook.net/D12489
In particular, we add a new FilterPolicy class. An instance
of this class can be supplied in Options when opening a
database. If supplied, the instance is used to generate
summaries of keys (e.g., a bloom filter) which are placed in
sstables. These summaries are consulted by DB::Get() so we
can avoid reading sstable blocks that are guaranteed to not
contain the key we are looking for.
This change provides one implementation of FilterPolicy
based on bloom filters.
Other changes:
- Updated version number to 1.4.
- Some build tweaks.
- C binding for CompactRange.
- A few more benchmarks: deleteseq, deleterandom, readmissing, seekrandom.
- Minor .gitignore update.
Changyu Bi