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Upgrades PyO3

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pull/648/head
Tpt 1 year ago committed by Thomas Tanon
parent 64f45cd11b
commit 8d348b2a6f
6 changed files with 174 additions and 251 deletions
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  1. 297
      Cargo.lock
  2. 2
      lib/Cargo.toml
  3. 2
      python/Cargo.toml
  4. 59
      python/src/io.rs
  5. 53
      python/src/sparql.rs
  6. 8
      python/src/store.rs

297
Cargo.lock generated
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@ -19,9 +19,9 @@ checksum = "f26201604c87b1e01bd3d98f8d5d9a8fcbb815e8cedb41ffccbeb4bf593a35fe"
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@ -1499,9 +1477,9 @@ dependencies = [
[[package]]
name = "regex-syntax"
version = "0.7.5"
version = "0.8.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "dbb5fb1acd8a1a18b3dd5be62d25485eb770e05afb408a9627d14d451bae12da"
checksum = "56d84fdd47036b038fc80dd333d10b6aab10d5d31f4a366e20014def75328d33"
[[package]]
name = "ring"
@ -1549,9 +1527,9 @@ checksum = "08d43f7aa6b08d49f382cde6a7982047c3426db949b1424bc4b7ec9ae12c6ce2"
[[package]]
name = "rustix"
version = "0.38.11"
version = "0.38.18"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c0c3dde1fc030af041adc40e79c0e7fbcf431dd24870053d187d7c66e4b87453"
checksum = "5a74ee2d7c2581cd139b42447d7d9389b889bdaad3a73f1ebb16f2a3237bb19c"
dependencies = [
"bitflags 2.4.0",
"errno",
@ -1683,14 +1661,14 @@ checksum = "4eca7ac642d82aa35b60049a6eccb4be6be75e599bd2e9adb5f875a737654af2"
dependencies = [
"proc-macro2",
"quote",
"syn 2.0.31",
"syn",
]
[[package]]
name = "serde_json"
version = "1.0.105"
version = "1.0.107"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "693151e1ac27563d6dbcec9dee9fbd5da8539b20fa14ad3752b2e6d363ace360"
checksum = "6b420ce6e3d8bd882e9b243c6eed35dbc9a6110c9769e74b584e0d68d1f20c65"
dependencies = [
"itoa",
"ryu",
@ -1699,9 +1677,9 @@ dependencies = [
[[package]]
name = "sha1"
version = "0.10.5"
version = "0.10.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "f04293dc80c3993519f2d7f6f511707ee7094fe0c6d3406feb330cdb3540eba3"
checksum = "e3bf829a2d51ab4a5ddf1352d8470c140cadc8301b2ae1789db023f01cedd6ba"
dependencies = [
"cfg-if",
"cpufeatures",
@ -1710,9 +1688,9 @@ dependencies = [
[[package]]
name = "sha2"
version = "0.10.7"
version = "0.10.8"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "479fb9d862239e610720565ca91403019f2f00410f1864c5aa7479b950a76ed8"
checksum = "793db75ad2bcafc3ffa7c68b215fee268f537982cd901d132f89c6343f3a3dc8"
dependencies = [
"cfg-if",
"cpufeatures",
@ -1733,9 +1711,9 @@ checksum = "54ac45299ccbd390721be55b412d41931911f654fa99e2cb8bfb57184b2061fe"
[[package]]
name = "smallvec"
version = "1.11.0"
version = "1.11.1"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "62bb4feee49fdd9f707ef802e22365a35de4b7b299de4763d44bfea899442ff9"
checksum = "942b4a808e05215192e39f4ab80813e599068285906cc91aa64f923db842bd5a"
[[package]]
name = "sparesults"
@ -1788,20 +1766,9 @@ checksum = "73473c0e59e6d5812c5dfe2a064a6444949f089e20eec9a2e5506596494e4623"
[[package]]
name = "syn"
version = "1.0.109"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "72b64191b275b66ffe2469e8af2c1cfe3bafa67b529ead792a6d0160888b4237"
dependencies = [
"proc-macro2",
"quote",
"unicode-ident",
]
[[package]]
name = "syn"
version = "2.0.31"
version = "2.0.38"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "718fa2415bcb8d8bd775917a1bf12a7931b6dfa890753378538118181e0cb398"
checksum = "e96b79aaa137db8f61e26363a0c9b47d8b4ec75da28b7d1d614c2303e232408b"
dependencies = [
"proc-macro2",
"quote",
@ -1865,9 +1832,9 @@ dependencies = [
[[package]]
name = "time"
version = "0.3.28"
version = "0.3.29"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "17f6bb557fd245c28e6411aa56b6403c689ad95061f50e4be16c274e70a17e48"
checksum = "426f806f4089c493dcac0d24c29c01e2c38baf8e30f1b716ee37e83d200b18fe"
dependencies = [
"deranged",
"itoa",
@ -1878,15 +1845,15 @@ dependencies = [
[[package]]
name = "time-core"
version = "0.1.1"
version = "0.1.2"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "7300fbefb4dadc1af235a9cef3737cea692a9d97e1b9cbcd4ebdae6f8868e6fb"
checksum = "ef927ca75afb808a4d64dd374f00a2adf8d0fcff8e7b184af886c3c87ec4a3f3"
[[package]]
name = "time-macros"
version = "0.2.14"
version = "0.2.15"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1a942f44339478ef67935ab2bbaec2fb0322496cf3cbe84b261e06ac3814c572"
checksum = "4ad70d68dba9e1f8aceda7aa6711965dfec1cac869f311a51bd08b3a2ccbce20"
dependencies = [
"time-core",
]
@ -1918,9 +1885,9 @@ checksum = "1f3ccbac311fea05f86f61904b462b55fb3df8837a366dfc601a0161d0532f20"
[[package]]
name = "tokio"
version = "1.32.0"
version = "1.33.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "17ed6077ed6cd6c74735e21f37eb16dc3935f96878b1fe961074089cc80893f9"
checksum = "4f38200e3ef7995e5ef13baec2f432a6da0aa9ac495b2c0e8f3b7eec2c92d653"
dependencies = [
"backtrace",
"bytes",
@ -1936,14 +1903,14 @@ checksum = "630bdcf245f78637c13ec01ffae6187cca34625e8c63150d424b59e55af2675e"
dependencies = [
"proc-macro2",
"quote",
"syn 2.0.31",
"syn",
]
[[package]]
name = "typenum"
version = "1.16.0"
version = "1.17.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "497961ef93d974e23eb6f433eb5fe1b7930b659f06d12dec6fc44a8f554c0bba"
checksum = "42ff0bf0c66b8238c6f3b578df37d0b7848e55df8577b3f74f92a69acceeb825"
[[package]]
name = "unicode-bidi"
@ -1953,9 +1920,9 @@ checksum = "92888ba5573ff080736b3648696b70cafad7d250551175acbaa4e0385b3e1460"
[[package]]
name = "unicode-ident"
version = "1.0.11"
version = "1.0.12"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "301abaae475aa91687eb82514b328ab47a211a533026cb25fc3e519b86adfc3c"
checksum = "3354b9ac3fae1ff6755cb6db53683adb661634f67557942dea4facebec0fee4b"
[[package]]
name = "unicode-normalization"
@ -1968,15 +1935,15 @@ dependencies = [
[[package]]
name = "unicode-width"
version = "0.1.10"
version = "0.1.11"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "c0edd1e5b14653f783770bce4a4dabb4a5108a5370a5f5d8cfe8710c361f6c8b"
checksum = "e51733f11c9c4f72aa0c160008246859e340b00807569a0da0e7a1079b27ba85"
[[package]]
name = "unindent"
version = "0.1.11"
version = "0.2.3"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "e1766d682d402817b5ac4490b3c3002d91dfa0d22812f341609f97b08757359c"
checksum = "c7de7d73e1754487cb58364ee906a499937a0dfabd86bcb980fa99ec8c8fa2ce"
[[package]]
name = "untrusted"
@ -2059,7 +2026,7 @@ dependencies = [
"once_cell",
"proc-macro2",
"quote",
"syn 2.0.31",
"syn",
"wasm-bindgen-shared",
]
@ -2081,7 +2048,7 @@ checksum = "54681b18a46765f095758388f2d0cf16eb8d4169b639ab575a8f5693af210c7b"
dependencies = [
"proc-macro2",
"quote",
"syn 2.0.31",
"syn",
"wasm-bindgen-backend",
"wasm-bindgen-shared",
]
@ -2150,9 +2117,9 @@ checksum = "ac3b87c63620426dd9b991e5ce0329eff545bccbbb34f3be09ff6fb6ab51b7b6"
[[package]]
name = "winapi-util"
version = "0.1.5"
version = "0.1.6"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "70ec6ce85bb158151cae5e5c87f95a8e97d2c0c4b001223f33a334e3ce5de178"
checksum = "f29e6f9198ba0d26b4c9f07dbe6f9ed633e1f3d5b8b414090084349e46a52596"
dependencies = [
"winapi 0.3.9",
]
@ -2231,30 +2198,28 @@ checksum = "ed94fce61571a4006852b7389a063ab983c02eb1bb37b47f8272ce92d06d9538"
[[package]]
name = "zstd"
version = "0.12.4"
version = "0.13.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "1a27595e173641171fc74a1232b7b1c7a7cb6e18222c11e9dfb9888fa424c53c"
checksum = "bffb3309596d527cfcba7dfc6ed6052f1d39dfbd7c867aa2e865e4a449c10110"
dependencies = [
"zstd-safe",
]
[[package]]
name = "zstd-safe"
version = "6.0.6"
version = "7.0.0"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "ee98ffd0b48ee95e6c5168188e44a54550b1564d9d530ee21d5f0eaed1069581"
checksum = "43747c7422e2924c11144d5229878b98180ef8b06cca4ab5af37afc8a8d8ea3e"
dependencies = [
"libc",
"zstd-sys",
]
[[package]]
name = "zstd-sys"
version = "2.0.8+zstd.1.5.5"
version = "2.0.9+zstd.1.5.5"
source = "registry+https://github.com/rust-lang/crates.io-index"
checksum = "5556e6ee25d32df2586c098bbfa278803692a20d0ab9565e049480d52707ec8c"
checksum = "9e16efa8a874a0481a574084d34cc26fdb3b99627480f785888deb6386506656"
dependencies = [
"cc",
"libc",
"pkg-config",
]

2
lib/Cargo.toml
Unescape View File

@ -56,7 +56,7 @@ js-sys = { version = "0.3.60", optional = true }
[target.'cfg(not(target_family = "wasm"))'.dev-dependencies]
criterion = "0.5"
oxhttp = "0.2.0-alpha.1"
zstd = "0.12"
zstd = ">=0.12, <0.14"
[package.metadata.docs.rs]
all-features = true

2
python/Cargo.toml
Unescape View File

@ -26,4 +26,4 @@ rustls = ["oxigraph/http-client-rustls-native"]
[dependencies]
oxigraph = { version = "0.4.0-alpha.1-dev", path="../lib" }
pyo3 = { version = "0.19", features = ["extension-module"] }
pyo3 = { version = "0.20", features = ["extension-module"] }

59
python/src/io.rs
Unescape View File

@ -9,7 +9,6 @@ use pyo3::intern;
use pyo3::prelude::*;
use pyo3::types::PyBytes;
use std::cmp::max;
use std::error::Error;
use std::ffi::OsStr;
use std::fs::File;
use std::io::{self, BufWriter, Cursor, Read, Write};
@ -63,7 +62,7 @@ pub fn parse(
let file_path = input.extract::<PathBuf>().ok();
let format = parse_format(format, file_path.as_deref())?;
let input = if let Some(file_path) = &file_path {
PyReadable::from_file(file_path, py).map_err(map_io_err)?
PyReadable::from_file(file_path, py)?
} else {
PyReadable::from_data(input)
};
@ -144,10 +143,9 @@ pub fn serialize<'a>(
));
}
writer.write_quad(quad)
}?;
}
.map_err(map_io_err)?;
}
writer.finish().map_err(map_io_err)
Ok(writer.finish()?)
},
output,
format,
@ -229,10 +227,7 @@ impl PyWritable {
let format = parse_format::<F>(format, file_path.as_deref())?;
let output = if let Some(output) = output {
if let Some(file_path) = &file_path {
Self::File(
py.allow_threads(|| File::create(file_path))
.map_err(map_io_err)?,
)
Self::File(py.allow_threads(|| File::create(file_path))?)
} else {
Self::Io(PyIo(output.into()))
}
@ -240,9 +235,7 @@ impl PyWritable {
PyWritable::Bytes(Vec::new())
};
let writer = write(BufWriter::new(output), format)?;
py.allow_threads(|| writer.into_inner())
.map_err(|e| map_io_err(e.into_error()))?
.close(py)
py.allow_threads(|| writer.into_inner())?.close(py)
}
fn close(self, py: Python<'_>) -> PyResult<Option<&PyBytes>> {
@ -252,12 +245,11 @@ impl PyWritable {
py.allow_threads(|| {
file.flush()?;
file.sync_all()
})
.map_err(map_io_err)?;
})?;
Ok(None)
}
Self::Io(mut io) => {
py.allow_threads(|| io.flush()).map_err(map_io_err)?;
py.allow_threads(|| io.flush())?;
Ok(None)
}
}
@ -294,12 +286,10 @@ impl Read for PyIo {
let read = self
.0
.as_ref(py)
.call_method1(intern!(py, "read"), (to_read,))
.map_err(to_io_err)?;
.call_method1(intern!(py, "read"), (to_read,))?;
let bytes = read
.extract::<&[u8]>()
.or_else(|e| read.extract::<&str>().map(str::as_bytes).map_err(|_| e))
.map_err(to_io_err)?;
.or_else(|_| read.extract::<&str>().map(str::as_bytes))?;
buf[..bytes.len()].copy_from_slice(bytes);
Ok(bytes.len())
})
@ -309,21 +299,17 @@ impl Read for PyIo {
impl Write for PyIo {
fn write(&mut self, buf: &[u8]) -> io::Result<usize> {
Python::with_gil(|py| {
self.0
Ok(self
.0
.as_ref(py)
.call_method1(intern!(py, "write"), (PyBytes::new(py, buf),))
.map_err(to_io_err)?
.extract::<usize>()
.map_err(to_io_err)
.call_method1(intern!(py, "write"), (PyBytes::new(py, buf),))?
.extract::<usize>()?)
})
}
fn flush(&mut self) -> io::Result<()> {
Python::with_gil(|py| {
self.0
.as_ref(py)
.call_method0(intern!(py, "flush"))
.map_err(to_io_err)?;
self.0.as_ref(py).call_method0(intern!(py, "flush"))?;
Ok(())
})
}
@ -382,21 +368,6 @@ pub fn parse_format<F: Format>(format: Option<&str>, path: Option<&Path>) -> PyR
}
}
fn to_io_err(error: PyErr) -> io::Error {
io::Error::new(io::ErrorKind::Other, error)
}
pub fn map_io_err(error: io::Error) -> PyErr {
if error
.get_ref()
.map_or(false, <(dyn Error + Send + Sync + 'static)>::is::<PyErr>)
{
*error.into_inner().unwrap().downcast().unwrap()
} else {
error.into()
}
}
pub fn map_parse_error(error: ParseError, file_path: Option<PathBuf>) -> PyErr {
match error {
ParseError::Syntax(error) => {
@ -429,7 +400,7 @@ pub fn map_parse_error(error: ParseError, file_path: Option<PathBuf>) -> PyErr {
PySyntaxError::new_err((error.to_string(), params))
}
}
ParseError::Io(error) => map_io_err(error),
ParseError::Io(error) => error.into(),
}
}

53
python/src/sparql.rs
Unescape View File

@ -12,11 +12,10 @@ use oxigraph::sparql::{
Variable,
};
use pyo3::basic::CompareOp;
use pyo3::exceptions::{
PyNotImplementedError, PyRuntimeError, PySyntaxError, PyTypeError, PyValueError,
};
use pyo3::exceptions::{PyRuntimeError, PySyntaxError, PyTypeError, PyValueError};
use pyo3::prelude::*;
use pyo3::types::PyBytes;
use std::io;
use std::path::PathBuf;
use std::vec::IntoIter;
@ -121,14 +120,12 @@ impl PyQuerySolution {
buffer
}
fn __richcmp__(&self, other: &Self, op: CompareOp) -> PyResult<bool> {
match op {
CompareOp::Eq => Ok(self.inner == other.inner),
CompareOp::Ne => Ok(self.inner != other.inner),
_ => Err(PyNotImplementedError::new_err(
"Ordering is not implemented",
)),
fn __eq__(&self, other: &Self) -> bool {
self.inner == other.inner
}
fn __ne__(&self, other: &Self) -> bool {
self.inner != other.inner
}
fn __len__(&self) -> usize {
@ -258,28 +255,23 @@ impl PyQuerySolutions {
iter.variables().to_vec()
}
},
)
.map_err(map_io_err)?;
)?;
match &mut self.inner {
PyQuerySolutionsVariant::Query(inner) => {
for solution in inner {
writer
.write(&solution.map_err(map_evaluation_error)?)
.map_err(map_io_err)?;
writer.write(&solution.map_err(map_evaluation_error)?)?;
}
}
PyQuerySolutionsVariant::Reader { iter, file_path } => {
for solution in iter {
writer
.write(&solution.map_err(|e| {
writer.write(&solution.map_err(|e| {
map_query_results_parse_error(e, file_path.clone())
})?)
.map_err(map_io_err)?;
})?)?;
}
}
}
writer.finish().map_err(map_io_err)
Ok(writer.finish()?)
},
output,
format,
@ -355,9 +347,8 @@ impl PyQueryBoolean {
PyWritable::do_write(
|output, format| {
py.allow_threads(|| {
QueryResultsSerializer::from_format(format)
.serialize_boolean_to_write(output, self.inner)
.map_err(map_io_err)
Ok(QueryResultsSerializer::from_format(format)
.serialize_boolean_to_write(output, self.inner)?)
})
},
output,
@ -435,11 +426,9 @@ impl PyQueryTriples {
|output, format| {
let mut writer = RdfSerializer::from_format(format).serialize_to_write(output);
for triple in &mut self.inner {
writer
.write_triple(&triple.map_err(map_evaluation_error)?)
.map_err(map_io_err)?;
writer.write_triple(&triple.map_err(map_evaluation_error)?)?;
}
writer.finish().map_err(map_io_err)
Ok(writer.finish()?)
},
output,
format,
@ -498,7 +487,7 @@ pub fn parse_query_results(
let file_path = input.extract::<PathBuf>().ok();
let format = parse_format(format, file_path.as_deref())?;
let input = if let Some(file_path) = &file_path {
PyReadable::from_file(file_path, py).map_err(map_io_err)?
PyReadable::from_file(file_path, py)?
} else {
PyReadable::from_data(input)
};
@ -520,9 +509,9 @@ pub fn map_evaluation_error(error: EvaluationError) -> PyErr {
EvaluationError::Storage(error) => map_storage_error(error),
EvaluationError::GraphParsing(error) => map_parse_error(error, None),
EvaluationError::ResultsParsing(error) => map_query_results_parse_error(error, None),
EvaluationError::ResultsSerialization(error) => map_io_err(error),
EvaluationError::Service(error) => match error.downcast() {
Ok(error) => map_io_err(*error),
EvaluationError::ResultsSerialization(error) => error.into(),
EvaluationError::Service(error) => match error.downcast::<io::Error>() {
Ok(error) => (*error).into(),
Err(error) => PyRuntimeError::new_err(error.to_string()),
},
_ => PyRuntimeError::new_err(error.to_string()),
@ -561,6 +550,6 @@ pub fn map_query_results_parse_error(error: ParseError, file_path: Option<PathBu
PySyntaxError::new_err((error.to_string(), params))
}
}
ParseError::Io(error) => map_io_err(error),
ParseError::Io(error) => error.into(),
}
}

8
python/src/store.rs
Unescape View File

@ -1,8 +1,6 @@
#![allow(clippy::needless_option_as_deref)]
use crate::io::{
allow_threads_unsafe, map_io_err, map_parse_error, parse_format, PyReadable, PyWritable,
};
use crate::io::{allow_threads_unsafe, map_parse_error, parse_format, PyReadable, PyWritable};
use crate::model::*;
use crate::sparql::*;
use oxigraph::io::RdfFormat;
@ -396,7 +394,7 @@ impl PyStore {
let file_path = input.extract::<PathBuf>().ok();
let format = parse_format::<RdfFormat>(format, file_path.as_deref())?;
let input = if let Some(file_path) = &file_path {
PyReadable::from_file(file_path, py).map_err(map_io_err)?
PyReadable::from_file(file_path, py)?
} else {
PyReadable::from_data(input)
};
@ -465,7 +463,7 @@ impl PyStore {
let file_path = input.extract::<PathBuf>().ok();
let format = parse_format::<RdfFormat>(format, file_path.as_deref())?;
let input = if let Some(file_path) = &file_path {
PyReadable::from_file(file_path, py).map_err(map_io_err)?
PyReadable::from_file(file_path, py)?
} else {
PyReadable::from_data(input)
};

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